A Primary Sequence Analysis of the ARGONAUTE Protein Family in Plants
Identifieur interne : 000354 ( Main/Exploration ); précédent : 000353; suivant : 000355A Primary Sequence Analysis of the ARGONAUTE Protein Family in Plants
Auteurs : Daniel Rodríguez-Leal [Mexique] ; Amanda Castillo-Cobián [Mexique] ; Isaac Rodríguez-Arévalo [Mexique] ; Jean-Philippe Vielle-Calzada [Mexique]Source :
- Frontiers in Plant Science [ 1664-462X ] ; 2016.
Abstract
Small RNA (sRNA)-mediated gene silencing represents a conserved regulatory mechanism controlling a wide diversity of developmental processes through interactions of sRNAs with proteins of the ARGONAUTE (AGO) family. On the basis of a large phylogenetic analysis that includes 206
Url:
DOI: 10.3389/fpls.2016.01347
PubMed: 27635128
PubMed Central: 5007885
Affiliations:
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Calzada, Jean Philippe" sort="Vielle Calzada, Jean Philippe" uniqKey="Vielle Calzada J" first="Jean-Philippe" last="Vielle-Calzada">Jean-Philippe Vielle-Calzada</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Grupo de Desarrollo Reproductivo y Apomixis, Unidad de Genómica Avanzada Laboratorio Nacional de Genómica para la Biodiversidad, CINVESTAV Irapuato</institution><country>Irapuato, Mexico</country></nlm:aff><country xml:lang="fr">Mexique</country><wicri:regionArea></wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27635128</idno><idno type="pmc">5007885</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5007885</idno><idno type="RBID">PMC:5007885</idno><idno type="doi">10.3389/fpls.2016.01347</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000F39</idno><idno type="wicri:Area/Pmc/Curation">000F38</idno><idno 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xml:lang="fr">Mexique</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Departamento de Ingeniería Genética de Plantas, CINVESTAV Irapuato</institution><country>Irapuato, Mexico</country></nlm:aff><country xml:lang="fr">Mexique</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Castillo Cobian, Amanda" sort="Castillo Cobian, Amanda" uniqKey="Castillo Cobian A" first="Amanda" last="Castillo-Cobián">Amanda Castillo-Cobián</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Departamento de Ingeniería Genética de Plantas, CINVESTAV Irapuato</institution><country>Irapuato, Mexico</country></nlm:aff><country xml:lang="fr">Mexique</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Rodriguez Arevalo, Isaac" sort="Rodriguez Arevalo, Isaac" uniqKey="Rodriguez Arevalo I" first="Isaac" last="Rodríguez-Arévalo">Isaac Rodríguez-Arévalo</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Grupo de Desarrollo Reproductivo y Apomixis, Unidad de Genómica Avanzada Laboratorio Nacional de Genómica para la Biodiversidad, CINVESTAV Irapuato</institution><country>Irapuato, Mexico</country></nlm:aff><country xml:lang="fr">Mexique</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Vielle Calzada, Jean Philippe" sort="Vielle Calzada, Jean Philippe" uniqKey="Vielle Calzada J" first="Jean-Philippe" last="Vielle-Calzada">Jean-Philippe Vielle-Calzada</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Grupo de Desarrollo Reproductivo y Apomixis, Unidad de Genómica Avanzada Laboratorio Nacional de Genómica para la Biodiversidad, CINVESTAV Irapuato</institution><country>Irapuato, Mexico</country></nlm:aff><country xml:lang="fr">Mexique</country><wicri:regionArea></wicri:regionArea></affiliation></author></analytic><series><title level="j">Frontiers in Plant Science</title><idno type="eISSN">1664-462X</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Small RNA (sRNA)-mediated gene silencing represents a conserved regulatory mechanism controlling a wide diversity of developmental processes through interactions of sRNAs with proteins of the ARGONAUTE (AGO) family. On the basis of a large phylogenetic analysis that includes 206 <italic>AGO</italic> genes belonging to 23 plant species, <italic>AGO</italic> genes group into four clades corresponding to the phylogenetic distribution proposed for the ten family members of <italic>Arabidopsis thaliana</italic>. A primary analysis of the corresponding protein sequences resulted in 50 sequences of amino acids (blocks) conserved across their linear length. Protein members of the AGO4/6/8/9 and AGO1/10 clades are more conserved than members of the AGO5 and AGO2/3/7 clades. In addition to blocks containing components of the PIWI, PAZ, and DUF1785 domains, members of the AGO2/3/7 and AGO4/6/8/9 clades possess other consensus block sequences that are exclusive of members within these clades, suggesting unforeseen functional specialization revealed by their primary sequence. We also show that AGO proteins of animal and plant kingdoms share linear sequences of blocks that include motifs involved in posttranslational modifications such as those regulating AGO2 in humans and the PIWI protein AUBERGINE in <italic>Drosophila</italic>. Our results open possibilities for exploring new structural and functional aspects related to the evolution of AGO proteins within the plant kingdom, and their convergence with analogous proteins in mammals and invertebrates.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Asif, M H" uniqKey="Asif M">M. H. Asif</name></author><author><name sortKey="Trivedi, P K" uniqKey="Trivedi P">P. K. Trivedi</name></author><author><name sortKey="Misra, P" uniqKey="Misra P">P. Misra</name></author><author><name sortKey="Nath, P" uniqKey="Nath P">P. Nath</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bai, M" uniqKey="Bai M">M. 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Van de Peer</name></author><author><name sortKey="Fawcett, J A" uniqKey="Fawcett J">J. A. Fawcett</name></author><author><name sortKey="Proost, S" uniqKey="Proost S">S. Proost</name></author><author><name sortKey="Sterck, L" uniqKey="Sterck L">L. Sterck</name></author><author><name sortKey="Vandepoele, K" uniqKey="Vandepoele K">K. Vandepoele</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vaucheret, H" uniqKey="Vaucheret H">H. Vaucheret</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Velasquez, S M" uniqKey="Velasquez S">S. M. Velasquez</name></author><author><name sortKey="Ricardi, M M" uniqKey="Ricardi M">M. M. Ricardi</name></author><author><name sortKey="Poulsen, C P" uniqKey="Poulsen C">C. P. Poulsen</name></author><author><name sortKey="Oikawa, A" uniqKey="Oikawa A">A. Oikawa</name></author><author><name sortKey="Dilokpimol, A" uniqKey="Dilokpimol A">A. Dilokpimol</name></author><author><name sortKey="Halim, A" uniqKey="Halim A">A. Halim</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vlad, F" uniqKey="Vlad F">F. Vlad</name></author><author><name sortKey="Spano, T" uniqKey="Spano T">T. Spano</name></author><author><name sortKey="Vlad, D" uniqKey="Vlad D">D. Vlad</name></author><author><name sortKey="Daher, F B" uniqKey="Daher F">F. B. Daher</name></author><author><name sortKey="Ouelhadj, A" uniqKey="Ouelhadj A">A. Ouelhadj</name></author><author><name sortKey="Fragkostefanakis, S" uniqKey="Fragkostefanakis S">S. Fragkostefanakis</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Mexique</li></country></list><tree><country name="Mexique"><noRegion><name sortKey="Rodriguez Leal, Daniel" sort="Rodriguez Leal, Daniel" uniqKey="Rodriguez Leal D" first="Daniel" last="Rodríguez-Leal">Daniel Rodríguez-Leal</name></noRegion><name sortKey="Castillo Cobian, Amanda" sort="Castillo Cobian, Amanda" uniqKey="Castillo Cobian A" first="Amanda" last="Castillo-Cobián">Amanda Castillo-Cobián</name><name sortKey="Rodriguez Arevalo, Isaac" sort="Rodriguez Arevalo, Isaac" uniqKey="Rodriguez Arevalo I" first="Isaac" last="Rodríguez-Arévalo">Isaac Rodríguez-Arévalo</name><name sortKey="Rodriguez Leal, Daniel" sort="Rodriguez Leal, Daniel" uniqKey="Rodriguez Leal D" first="Daniel" last="Rodríguez-Leal">Daniel Rodríguez-Leal</name><name sortKey="Vielle Calzada, Jean Philippe" sort="Vielle Calzada, Jean Philippe" uniqKey="Vielle Calzada J" first="Jean-Philippe" last="Vielle-Calzada">Jean-Philippe Vielle-Calzada</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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